This directory contains lessons, code and data used to teach R in BIO 46: Research in Ecology and Evolution, taught at Stanford University. Lessons were initially developed by Jes Coyle for a pilot class during the 2017 Winter Quarter.

R Lesson 1: Introduction to R

• Instructions
• R code
• R lesson markdown file

R Lesson 2: Summarizing and Visualizing Data Part 1

• Instructions
• code
• Required data: iButtons_Fall2016.csv and JRTrees_Fall2016.csv
• R lesson markdown file

R Lesson 3: Summarizing and Visualizing Data Part 2

• Instructions
• R code
• Required data: iButtons_Fall2016.csv and JRTrees_Fall2016.csv
• R lesson markdown file

R Lesson 4: Analyzing Categorical Data

• Instructions
• R code
• Required data: fungi_example_data.csv
• R lesson markdown file

R Lesson 5: Linear Models and Community Similarity

• Instructions
• R code
• Required data: merged_final_carbon_utilization_data.csv
• R lesson markdown file

R Lesson 5 Supplement: Creating Ecoplate Data for Analysis

• Instructions
• R code
• Required data: carbon_utilization.csv, bacteria_plates.csv and ecoplates.csv
• R lesson markdown file

R Lesson 6: Planning Analyses

• Instructions
• R lesson markdown file